Publications
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Single-cell census of human tooth development enables generation of human enamel
Alghadeer, et al. 2023
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Risk of Subsequent Respiratory Virus Detection After Primary Virus Detection in a Community Household Study—King County, Washington, 2019–2021
Heimonen, et al. 2023
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Streptococcus pneumoniae nasal carriage patterns with and without common respiratory virus detections in households in Seattle, WA, USA before and during the COVID-19 pandemic
Bennett, et al. 2023
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An Atlas of Variant Effects to understand the genome at nucleotide resolution
Fowler, et al. 2023
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Care-seeking correlates of acute respiratory illness among sheltered adults experiencing homelessness in Seattle, WA, 2019: a community-based cross-sectional study
Rogers, et al. 2023
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Respiratory syncytial virus and other respiratory virus infections in residents of homeless shelters–King County, Washington, 2019–2021
McCulloch, et al. 2023
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CRaTER enrichment for on-target gene-editing enables generation of variant libraries in hiPSCs
Friedman, et al. 2023.
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DNA Repair Function Scores for 2172 Variants in the BRCA1 Amino-Terminus
Diabate, et al. 2023
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Multiplex, single-cell CRISPRa screening for cell type specific regulatory elements
Chardon, et al. 2023
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Sentinel Surveillance System Implementation and Evaluation for SARS-CoV-2 Genomic Data, Washington, USA, 2020–2021
Oltean, et al. 2023
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Evaluation of a Commercially Available Rapid RT-PCR Assay's Detection of SARS-CoV-2 Novel Variants
Back, et al. 2023
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Longitudinal home self-collection of capillary blood using homeRNA correlates interferon and innate viral defense pathways with SARS-CoV-2 viral clearance
Lim, et al. 2023
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Beyond the exome: what's next in diagnostic testing for Mendelian conditions
Wojcik, et al. 2023
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CASCADIA: A prospective community-based study protocol for assessing SARS-CoV-2 vaccine effectiveness in children and adults utilizing a remote nasal swab collection and web-based survey design
Babu, et al. 2023
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P460: Gene-and variant-specific calibration of in silico predictive models results in reclassification of 28% of missense VUS from ClinGen VCEPs
Fayer, et al. 2023
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Remote Surveillance and Detection of SARS-CoV-2 Transmission Among Household Members in King County, Washington
Rogers, et al. 2022
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Local-Scale phylodynamics reveal differential community impact of SARS-CoV-2 in metropolitan US county
Parades, et al. 2022
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1359. Human Parainfluenza Epidemiology in Homeless Shelters—King County, Washington
Chow, et al. 2022
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2202. Influenza Surveillance of Families in an Observational Household Study 2019-2021
Babu, et al. 2022
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1916. Evaluation of nasal swab collection methods on a university campus during the SARS-CoV-2 pandemic
O'Hanlon, et al. 2022
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1456. Environmental and Nasal Pathogen Surveillance in Seattle Area Homeless Shelters
Franko, et al. 2022
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Multiregion transcriptomic profiling of the primate brain reveals signatures of aging and the social environment
Chiou, et al. 2022
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1904. Health Behavioral Trends and Absenteeism Associated with Acute Respiratory Illness Before and During the SARS-CoV-2 Pandemic in a Community Household Cohort, King County, Washington
Chung, et al. 2022
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Trends in risk factors and symptoms associated with SARS-CoV-2 and rhinovirus test positivity in King County, Washington, June 2020 to July 2022
Hansen, et al. 2022
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Human Parainfluenza Virus in Homeless Shelters before and during the COVID-19 Pandemic, Washington, USA
Chow, et al. 2022
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SARS-CoV-2 Screening Testing in Schools: A Comparison of School-Vs. Home-Based Collection Methods
Chung, et al. 2022
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The clinical and genomic epidemiology of rhinovirus in homeless shelters—King County, Washington
Chow, et al. 2022
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A single-cell multi-omic atlas spanning the adult rhesus macaque brain
Chiou, et al. 2022
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Genomic surveillance of SARS-CoV-2 Omicron variants on a university campus
Weil, et al. 2022
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Multiplex target-redundant RT-LAMP for robust detection of SARS-CoV-2 using fluorescent universal displacement probes
Kline, et al. 2022
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Human iPSC Derived Enamel Organoid Guided by Single-Cell Atlas of Human Tooth Development
Alghadeer, et al. 2022
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Single-cell analysis of chromatin and expression reveals age-and sex-associated alterations in the human heart
Read, et al. 2022
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Associations Between Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants and Risk of Coronavirus Disease 2019 (COVID-19) Hospitalization Among Confirmed Cases in Washington State: A Retrospective Cohort Study
Paredes, et al. 2022
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Simultaneous monitoring of HIV viral load and screening of SARS-CoV-2 employing a low-cost RT-qPCR test workflow
Gulati, et al. 2022
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Antibacterial potency of type VI amidase effector toxins is dependent on substrate topology and cellular context.
Radkov, et al. 2022
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Mapping the emergence of SARS-CoV-2 Omicron variants on a university campus
Weil, et al. 2022
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The functional impact of BRCA1 BRCT domain variants using multiplexed DNA double-strand break repair assays
Adamovich, et al. 2022
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Characterizing neurons in schizophrenia-associated regions of the rhesus macaque brain
Dugan, et al. 2022
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Full View Highly sensitive immunoresistive sensor for point-of-care screening for COVID-19
Li, et al. 2022
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Substrate topology and cognate immunity modulate antibacterial toxicity of Tae cell wall hydrolases
Radkov, et al. 2022
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Interactions among 17 respiratory pathogens: a cross-sectional study using clinical and community surveillance data
Burstein, et al. 2022
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Diagnostic accuracy of an at-home, rapid self-test for influenza: prospective comparative accuracy study
Geyer, et al. 2022
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Phylogenomics of Severe Acute Respiratory Syndrome Coronavirus 2 in Emergency Shelters for People Experiencing Homelessness
Casto, et al. 2022
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MaveDB v2: a curated community database with over three million variant effects from multiplexed functional assays
Rubin, et al. 2022
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Human Parainfluenza Epidemiology in Homeless Shelters - King County, Washington
Chow, et al. 2022
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The Seattle Flu Study: when regulations hinder pandemic surveillance
Boeckh, et al. 2021
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Harmony COVID-19: A ready-to-use kit, low-cost detector, and smartphone app for point-of-care SARS-CoV-2 RNA detection
Panpradist, et al. 2021
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Closing the gap: Systematic integration of multiplexed functional data resolves variants of uncertain significance in BRCA1, TP53, and PTEN
Fayer, et al. 2021
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Remote Household Observation for Noninfluenza Respiratory Viral Illness
Emanuels, et al. 2021
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SwabExpress: An End-to-End Protocol for Extraction-Free COVID-19 Testing
Srivatsan, et al. 2021
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SARS-CoV-2 Epidemiology on a Public University Campus in Washington State
Weil, et al. 2021
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Incidence of medically attended acute respiratory illnesses due to respiratory viruses across the life course during the 2018/19 influenza season
Jackson, et al. 2021
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Inexpensive workflow for simultaneous monitoring of HIV viral load and detection of SARS-CoV-2 infection
Gaurav, et al. 2021
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School-Based Surveillance of Respiratory Pathogens on “High-Touch” Surfaces
Murray, et al. 2021
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Comparison of symptoms and RNA levels in children and adults with SARS-CoV-2 infection in the community setting
Chung, et al. 2021
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Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State
Müller, et al. 2021
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Comparable Specimen Collection from Both Ends of At-Home Midturbinate Swabs
Truong, et al. 2021
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Evaluating Specimen Quality and Results from a Community-Wide, Home-Based Respiratory Surveillance Study
Kim, et al. 2021
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Corrigendum to ‘Simpler and faster Covid-19 testing: Strategies to streamline SARS-CoV-2 molecular assays’
Panpradist, et al. 2021
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Effects of weather-related social distancing on city-scale transmission of respiratory viruses: a retrospective cohort study
Jackson, et al. 2021
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Simpler and faster Covid-19 testing: Strategies to streamline SARS-CoV-2 molecular assays
Panpradist, et al. 2021
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Characteristics of COVID-19 in Homeless Shelters: A Community-Based Surveillance Study
Rogers, et al. 2021
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Multiplexed functional assessment of genetic variants in CARD11
Meitlis, et al. 2020
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Point-of-care molecular testing and antiviral treatment of influenza in residents of homeless shelters in Seattle, WA: study protocol for a stepped-wedge cluster-randomized controlled trial
Newman, et al. 2020
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Viral genome sequencing places White House COVID-19 outbreak into phylogenetic context
Bedford, et al. 2020
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Seattle flu study “swab and send”: At-home surveillance methods to estimate the burden of respiratory pathogens on a city-wide scale
Kim, et al. 2020
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The Seattle Flu Study: a multiarm community-based prospective study protocol for assessing influenza prevalence, transmission and genomic epidemiology
Chu, et al. 202
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Cryptic transmission of SARS-CoV-2 in Washington state
Bedford, et al. 2020
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Cross-Sectional Prevalence of SARS-CoV-2 Among Skilled Nursing Facility Employees and Residents Across Facilities in Seattle
Weil, et al. 2020
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Early Detection of Covid-19 through a Citywide Pandemic Surveillance Platform
Chu, et al. 2020
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Multimodal single-cell analysis reveals distinct radioresistant stem-like and progenitor cell populations in murine glioma
Alexander, et al. 2020
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Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California
Deng, et al. 2020
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Evidence for Limited Early Spread of COVID-19 Within the United States, January–February 2020
Jorden, et al. 2020
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Preliminary support for a "dry swab, extraction free" protocol for SARS-CoV-2 testing via RT-qPCR
Srivatsan, et al. 2020
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COVID-19 SCAN molecular workflow
Starita, 2020
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Effects of weather-related social distancing on city-scale transmission of respiratory viruses
Jackson, et al. 2020